| MirGeneDB ID | Lch-Mir-17-P2c |
|---|---|
| Family name | MIR-17 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-17-P1a Lch-Mir-17-P1c Lch-Mir-17-P1d Lch-Mir-17-P2a Lch-Mir-17-P4a Lch-Mir-17-P4c Lch-Mir-17-P4d |
| Orthologues | Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126623.1: 2114050-2114114 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-17-P2c) |
Mir-17-P1c
JH126623.1: 2113883-2113940 [+]
Ensembl
Mir-17-P2c JH126623.1: 2114050-2114114 [+] Ensembl Mir-17-P4c JH126623.1: 2114536-2114596 [+] Ensembl Mir-19-P2c JH126623.1: 2114677-2114757 [+] Ensembl Mir-92-P2c JH126623.1: 2115244-2115306 [+] Ensembl |
| Seed | AAGGUGC |
| Precursor (pre-Mir +30nt flank) |
AUUAGCACAAAGUUCAAGUGUAUCUUGUGGUAAGGUGCAUCUAGCGCAGUUAGUGAGGUAGCUUAGAAUCUACUGCCCUAAAUGCUCCUUCUGGCACAAGAAACUACAUAUCCAUGAUAAGGUGUGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUUAGCACAAAGUUCAA- - A G --| U C C U UGAGGUA GU GU UCUUGUG UA AGG GCAU UAG GCAGU AG G CA CA AGAACAC GU UCC CGUA AUC CGUCA UC C UGUGGAAUAGUACCUAUA U A G CU^ U A C - UAAGAUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Lch-Mir-17-P2c_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAAGGUGCAUCUAGCGCAGUUAG -23
Get sequence
|
| Star sequence | Lch-Mir-17-P2c_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- UACUGCCCUAAAUGCUCCUUCUGGC -65
Get sequence
|
