MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-17-P2c3

Family name MIR-17 (all species)
Seed AAGGUGC
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-18a-1
Paralogues Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xla-Mir-17-P2c4  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xtr-Mir-17-P2c 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030738.1: 47238694-47238758 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2c3)
Mir-92-P2c3 NC_030738.1: 47238172-47238237 [-] UCSC Ensembl
Mir-92-P1c3 NC_030738.1: 47238303-47238364 [-] UCSC Ensembl
Mir-19-P2c3 NC_030738.1: 47238435-47238491 [-] UCSC Ensembl
Mir-17-P4c3 NC_030738.1: 47238544-47238604 [-] UCSC Ensembl
Mir-17-P2c3 NC_030738.1: 47238694-47238758 [-] UCSC Ensembl
Mir-17-P1c3 NC_030738.1: 47238821-47238877 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACUCCUAUGCUCAGUAGUCUCCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGACAUAGCGUAGCAUCUACUGCCCUAAAUGCUCCUUUUGGCACAGGGUGUUCCAUGAUCAUCUCUCGACUG
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Structure
        10        20          30          40        50        60 
GGACUCCUAUGCUCAGUAGUCU--          --|  U    C   U     U  UGACAUA 
                        CCUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                        GGGACACGGU  UCC CGUA AUC CGUCA UC       C
GUCAGCUCUCUACUAGUACCUUGU          UU^  U    A   C     -  UACGAUG 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-17-P2c3_5p

mirBase accessionMIMAT0001349
Sequence
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Co-mature sequence

Xla-Mir-17-P2c3_3p

mirBase accessionNone
Sequence
41- ACUGCCCUAAAUGCUCCUUUUGGC -65
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