MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-17-P1c4

Family name MIR-17 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xla-Mir-17-P1c3  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xtr-Mir-17-P1c 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030739.1: 74792740-74792796 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c4)		 Mir-92-P2c4 NC_030739.1: 74792087-74792151 [-] UCSC Ensembl
Mir-92-P1c4 NC_030739.1: 74792213-74792274 [-] UCSC Ensembl
Mir-19-P2c4 NC_030739.1: 74792343-74792399 [-] UCSC Ensembl
Mir-17-P4c4 NC_030739.1: 74792455-74792515 [-] UCSC Ensembl
Mir-17-P2c4 NC_030739.1: 74792615-74792679 [-] UCSC Ensembl
Mir-17-P1c4 NC_030739.1: 74792740-74792796 [-] UCSC Ensembl
Seed CUGCACA
Precursor
(pre-Mir +30nt flank)		 
CUAAUGUGCUGUGACCUGUCUGGGUUGUGCAAAAGUGCUUAUAGUGCAGGGAGAAUUUAGACCUACUGCACAGUAAGCACUUCCUGCAUCACCAAGAUGCAUCAAUCAGCCCUUGCU
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Structure
        10          20        30         40        50       
CUAAUGUGCUGUGACCU--    G   U     A-|         A      GGAGAAU 
                   GUCU GGU GUGCA  AAGUGCUUAU GUGCAG       U
                   UAGA CCA UACGU  UUCACGAAUG CACGUC       U
UCGUUCCCGACUAACUACG    A   C     CC^         A      AUCCAGA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-17-P1c4_5p*
mirBase accessionNone
Sequence 
0- AAAAGUGCUUAUAGUGCAGGGA -22
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Mature sequence

Xla-Mir-17-P1c4_3p
mirBase accessionNone
Sequence 
34- ACUGCACAGUAAGCACUUCCUGC -57
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