MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-17-P1a  Gja-Mir-17-P2a  Gja-Mir-17-P2c  Gja-Mir-17-P4a  Gja-Mir-17-P4c 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Hsa-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015272222.1: 143-200 [+]
Precursor
(pre-Mir +30nt flank)
GGUGUUCUGGAUGAGAGCCUUGAGUGGUGCAAAAGUGCUUAUAGUGCAGGUAGCAUAUUGGCACCUACUGCAGUAUUGGCACUUCAGCUUCAUUAUGGCAAUCUCUGUGGCCGCUGCU
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Structure
        10           20        30        40        50         
GGUGUUCUGGAUGAGAG---| UUG     U  AA       U   G     G   CAUAU 
                    CC   AGUGG GC  AAGUGCU AUA UGCAG UAG     \
                    GG   UUACU CG  UUCACGG UAU ACGUC AUC     U
UCGUCGCCGGUGUCUCUAAC^ UA-     U  AC       U   G     -   CACGG 
      110       100         90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Gja-Mir-17-P1c_5p

mirBase accessionNone
Sequence
0- AAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Gja-Mir-17-P1c_3p* (predicted)

mirBase accessionNone
Sequence
36- ACUGCAGUAUUGGCACUUCAGC -58
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