Mir-17-P1c

MirGeneDB ID

Cli-Mir-17-P1c

Family name

MIR-17 (all species)

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-106

Paralogues

Cli-Mir-17-P1a Cli-Mir-17-P2a Cli-Mir-17-P2c Cli-Mir-17-P4a Cli-Mir-17-P4c

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(colLiv2)

scaffold72: 3452469-3452526 [-]

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-92-P2c scaffold72: 3451682-3451746 [-]
Mir-92-P1c scaffold72: 3451822-3451883 [-]
Mir-19-P2c scaffold72: 3451991-3452050 [-]
Mir-17-P4c scaffold72: 3452115-3452175 [-]
Mir-17-P2c scaffold72: 3452309-3452373 [-]
Mir-17-P1c scaffold72: 3452469-3452526 [-]

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

AAAAGUUUGGUGAUGGGCCUUGAGUUGUGCAAAAGUGCUUACAGUGCAGGUAGAGUUUAGGAUCUACUGCAGUAUAAGCACUUCUGGCAUUACUGUGGCGAUUUAGUGACGGUGGUGG

Get precursor sequence

Structure

        10           20        30         40        50        
AAAAGUUUGGUGAUGGG---| UUG   U    AA-         CAG     G   AGUU 
                    CC   AGU GUGC   AAGUGCUUA   UGCAG UAG    U
                    GG   UCA UACG   UUCACGAAU   ACGUC AUC    A
GGUGGUGGCAGUGAUUUAGC^ UG-   U    GUC         AUG     -   UAGG 
      110       100         90        80        70         60