MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-17-P1c

Family name MIR-17 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-17-P1a  Cmi-Mir-17-P1b  Cmi-Mir-17-P1d  Cmi-Mir-17-P2a  Cmi-Mir-17-P2c  Cmi-Mir-17-P3b  Cmi-Mir-17-P4a  Cmi-Mir-17-P4b  Cmi-Mir-17-P4c  Cmi-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635856.1: 9595929-9595986 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c)		 Mir-92-P2c KI635856.1: 9594643-9594704 [-] UCSC Ensembl
Mir-92-P1c KI635856.1: 9594788-9594849 [-] UCSC Ensembl
Mir-19-P2c KI635856.1: 9594951-9595013 [-] UCSC Ensembl
Mir-17-P4c KI635856.1: 9595093-9595152 [-] UCSC Ensembl
Mir-19-P1c KI635856.1: 9595282-9595339 [-] UCSC Ensembl
Mir-17-P2c KI635856.1: 9595761-9595825 [-] UCSC Ensembl
Mir-17-P1c KI635856.1: 9595929-9595986 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
GCUUGAAUUGUGGAUUUGGCCAAGUUGUGCAAAAGUGCUUACAGUGCAGGUAGCAGUCAACAUCUACUGCAGUGCAAGCACUUCUCGCAUUACCUUGGCAGAUAUUUUAAUGAUAACU
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Structure
        10         20         30         40        50        
GCUUGAAUUGUGGAUUUG-      UU-    AA-|       A  G     G   CAGU 
                   GCCAAG   GUGC   AAGUGCUU CA UGCAG UAG    C
                   CGGUUC   UACG   UUCACGAA GU ACGUC AUC    A
UCAAUAGUAAUUUUAUAGA      CAU    CUC^       C  G     -   UACA 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-17-P1c_5p
mirBase accessionNone
Sequence 
0- AAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Cmi-Mir-17-P1c_3p*
mirBase accessionNone
Sequence 
35- ACUGCAGUGCAAGCACUUCUCGC -58
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