Mir-17-P4d

MirGeneDB ID

Cmi-Mir-17-P4d

Family name

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-17-P1a Cmi-Mir-17-P1b Cmi-Mir-17-P1c Cmi-Mir-17-P1d Cmi-Mir-17-P2a Cmi-Mir-17-P2c Cmi-Mir-17-P3b Cmi-Mir-17-P4a Cmi-Mir-17-P4b Cmi-Mir-17-P4c

Orthologues

Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cja-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Hsa-Mir-17-P4d Laf-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Pab-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4 Xtr-Mir-17-P4d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI637193.1: 1684-1744 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4d)

Mir-17-P4d KI637193.1: 1684-1744 [-] UCSC Ensembl
Mir-17-P1d KI637193.1: 3339-3400 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GUUUUCAGAGACUGAUGGGUCUCGGAGCUCCAAAGUGCUGUUAGUGCAGGUAGUGUGUGUUUGAAUCUACUGCAUUAGAAGCACUUCUGAAGCUACGGGGCCUCAAGCAACAGCUCACUGA

Get precursor sequence

Structure

        10          20        30         40        50          
GUUUUCAGAGACUGAUG--       G    C  -|      G         G   UGUGUG 
                   GGUCUCG AGCU CA AAGUGCU UUAGUGCAG UAG      \
                   CCGGGGC UCGA GU UUCACGA GAUUACGUC AUC      U
AGUCACUCGACAACGAACU       A    A  C^      A         -   UAAGUU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-17-P4d_5p

mirBase accession

None

Sequence

0- CAAAGUGCUGUUAGUGCAGGUAG -23

Get sequence

Star sequence

Cmi-Mir-17-P4d_3p*

mirBase accession

None

Sequence

38- ACUGCAUUAGAAGCACUUCUGAA -61

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