MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-17-P4d

Family name MIR-17 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-93
Paralogues Cpo-Mir-17-P1a  Cpo-Mir-17-P1c  Cpo-Mir-17-P1d  Cpo-Mir-17-P2a  Cpo-Mir-17-P2c  Cpo-Mir-17-P4a  Cpo-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_30: 4036154-4036215 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-17-P1d scaffold_30: 4035937-4035998 [+] UCSC
Mir-17-P4d scaffold_30: 4036154-4036215 [+] UCSC
Mir-92-P2d scaffold_30: 4036356-4036415 [+] UCSC
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UCAUCUCUUGGACCUUCGUCAUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCUGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCCAGGACACAGCCUCUCCCAGUUGCC
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Structure
        10          20        30          40        50        60
UCAUCUCUUGGACCUUC--   A         CA-       -|    U    G   UGUGAU 
                   GUC UGGGGGCUC   AAGUGCU GUUCG GCAG UAG      U
                   CAG ACCCCCGAG   UUCACGA CGAGU CGUC AUC      A
CCGUUGACCCUCUCCGACA   G         CCC       U^    -    -   CAGUCC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-17-P4d_5p
mirBase accessionMIMAT0046933
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
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Star sequence

Cpo-Mir-17-P4d_3p*
mirBase accessionMIMAT0046934
Sequence 
39- ACUGCUGAGCUAGCACUUCCCGA -62
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