MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-17-P4d

Family name MIR-17 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Tni-Mir-17-P1d  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 1: 5569901-5569959 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-92-P2d 1: 5569539-5569598 [-] UCSC Ensembl
Mir-19-P2d 1: 5569689-5569755 [-] UCSC Ensembl
Mir-17-P4d 1: 5569901-5569959 [-] UCSC Ensembl
Mir-17-P1d 1: 5570107-5570169 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UUGGAGGGGGGUUUCCUACCUCUGGCUGUCAAAAGUGCUGUUUGUGCAGGUAGCGUUCAUCCAUCUACUGCAAAACCAGCACUUUAAGGCAGACGGAGGGGUGAUUUGUCCCCGCGGGC
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Structure
        10          20        30         40        50         
UUGGAGGGGGGUUUCCUA--      G     A-|        U  G     G   CGUUC 
                    CCUCUG CUGUC  AAAGUGCUG UU UGCAG UAG     \
                    GGAGGC GACGG  UUUCACGAC AA ACGUC AUC     A
CGGGCGCCCCUGUUUAGUGG      A     AA^        C  A     -   UACCU 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Sp Sp Sp To
Mature sequence

Tni-Mir-17-P4d_5p
mirBase accessionNone
Sequence 
0- AAAAGUGCUGUUUGUGCAGGUAG -23
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Star sequence

Tni-Mir-17-P4d_3p*
mirBase accessionNone
Sequence 
36- ACUGCAAAACCAGCACUUUAAGG -59
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