MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-17-P1d

Family name MIR-17 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Tni-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 1: 5570107-5570169 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-92-P2d 1: 5569539-5569598 [-] UCSC Ensembl
Mir-19-P2d 1: 5569689-5569755 [-] UCSC Ensembl
Mir-17-P4d 1: 5569901-5569959 [-] UCSC Ensembl
Mir-17-P1d 1: 5570107-5570169 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
AGCUUUGCGUCUCAGUCGUCCACCGUGCGAUAAAGUGCUUACAGUGCAGGUAGUGACGAUAACCUGGCCUACUGCAGUGUGAGCACUUCUUUCCCACUCUGGACAACAGUCUCCAGGCCAGAG
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Structure
        10          20        30         40        50        60 
AGCUUUGCGUCUCAGUC--     CC   C  UA-|          G     G   UGACGAU 
                   GUCCA  GUG GA   AAGUGCUUACA UGCAG UAG       \
                   CAGGU  CAC CU   UUCACGAGUGU ACGUC AUC       A
GAGACCGGACCUCUGACAA     CU   C  UUC^          G     -   CGGUCCA 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sp Sp Sp To
Mature sequence

Tni-Mir-17-P1d_5p
mirBase accessionNone
Sequence 
0- UAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Tni-Mir-17-P1d_3p*
mirBase accessionNone
Sequence 
40- ACUGCAGUGUGAGCACUUCUUUC -63
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