MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-17-P1d

Family name MIR-17 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-106b
Paralogues Eca-Mir-17-P1a  Eca-Mir-17-P1c  Eca-Mir-17-P2a  Eca-Mir-17-P2c  Eca-Mir-17-P4a  Eca-Mir-17-P4c  Eca-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009160.1: 8115356-8115417 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-92-P2d CM009160.1: 8114925-8114984 [-] UCSC Ensembl
Mir-17-P4d CM009160.1: 8115130-8115191 [-] UCSC Ensembl
Mir-17-P1d CM009160.1: 8115356-8115417 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UCCUCCCUCCCACUCAGGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCAUGCUACCGCACUGUGGGUACUUGCUGCUCCAGUAGGGCACGCACAGCGUCCCUGGAG
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Structure
        10          20        30         40        50          
UCCUCCCUCCCACUCAG--       C     UA-|      G       AGAUAGUGGUCC 
                   GCCCUGC GGGGC   AAGUGCU ACAGUGC            \
                   CGGGAUG CCUCG   UUCAUGG UGUCACG            U
GAGGUCCCUGCGACACGCA       A     UCG^      G       CCAUCGUACCUC 
120       110       100        90        80        70
Deep sequencing
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CommentThere are Dicer cuts +1 and +2 on both arms.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-17-P1d_5p
mirBase accessionMIMAT0013054
Sequence 
0- UAAAGUGCUGACAGUGCAGAU -21
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Star sequence

Eca-Mir-17-P1d_3p*
mirBase accessionNone
Sequence 
40- CCGCACUGUGGGUACUUGCUGC -62
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