MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-17-P1d

Family name MIR-17 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-17-P1a  Cja-Mir-17-P1c  Cja-Mir-17-P2a  Cja-Mir-17-P2c  Cja-Mir-17-P4a  Cja-Mir-17-P4c  Cja-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021916.1: 11550569-11550630 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-17-P1d CM021916.1: 11550569-11550630 [+] UCSC Ensembl
Mir-17-P4d CM021916.1: 11550795-11550856 [+] UCSC Ensembl
Mir-92-P2d CM021916.1: 11551002-11551061 [+] UCSC Ensembl
Seed CGCACUG
Precursor
(pre-Mir +30nt flank)		 
GCCUCCCUCCUGCUCCAGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACGCACAGCAUCUGCAGAG
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Structure
        10          20        30         40        50          
GCCUCCCUCCUGCUCCA--       C     UA-|      G       AGAUAGUGGUCC 
                   GCCCUGC GGGGC   AAGUGCU ACAGUGC            \
                   CGGGACG CCUCG   UUCAUGG UGUCACG            U
GAGACGUCUACGACACGCA       A     UCG^      G       CCAUCGUGCCUC 
120       110       100        90        80        70
Deep sequencing
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CommentThere are Dicer cuts +1 and +2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Cja-Mir-17-P1d_5p*
mirBase accessionNone
Sequence 
0- UAAAGUGCUGACAGUGCAGAU -21
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Mature sequence

Cja-Mir-17-P1d_3p
mirBase accessionNone
Sequence 
40- CCGCACUGUGGGUACUUGCUGC -62
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