MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-17-P1d

Family name MIR-17 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-17-P1a  Pab-Mir-17-P1c  Pab-Mir-17-P2a  Pab-Mir-17-P2c  Pab-Mir-17-P4a  Pab-Mir-17-P4c  Pab-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054685.2: 9846624-9846685 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-92-P2d CM054685.2: 9846193-9846252 [-] UCSC Ensembl
Mir-17-P4d CM054685.2: 9846398-9846459 [-] UCSC Ensembl
Mir-17-P1d CM054685.2: 9846624-9846685 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
CCCUCCCUCCCGCUCCAGCCCUGCCGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACGCACAGCGUCCGUGGAG
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Structure
        10          20        30         40        50          
CCCUCCCUCCCGCUCCA--       C     UA-|      G       AGAUAGUGGUCC 
                   GCCCUGC GGGGC   AAGUGCU ACAGUGC            \
                   CGGGACG CCUCG   UUCAUGG UGUCACG            U
GAGGUGCCUGCGACACGCA       A     UCG^      G       CCAUCGUGCCUC 
120       110       100        90        80        70
Deep sequencing
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CommentThere are Dicer cuts +1 and +2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Li Li
Mature sequence

Pab-Mir-17-P1d_5p
mirBase accessionNone
Sequence 
0- UAAAGUGCUGACAGUGCAGAU -21
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Star sequence

Pab-Mir-17-P1d_3p*
mirBase accessionNone
Sequence 
40- CCGCACUGUGGGUACUUGCUGC -62
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