MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-17-P1d

Family name MIR-17 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mal-Mir-17-P4c  Mal-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV885025.1: 87774-87836 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-17-P1d KV885025.1: 87774-87836 [+] UCSC Ensembl
Mir-17-P4d KV885025.1: 88063-88120 [+] UCSC Ensembl
Mir-19-P2d KV885025.1: 88524-88590 [+] UCSC Ensembl
Mir-92-P2d KV885025.1: 88714-88773 [+] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
GCGGUCCUUUAUCACUGCUUCAGUGUGUGAUAAAGUGCUUACAGUGCAGGUAGUGAUGAUAACCUGGCCUACUGCAGUGUGAGCACUUCUUUCCCACGCUGGACAAAAGAUCACCAAUCUGCC
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Structure
        10          20        30         40        50        60 
GCGGUCCUUUAUCACUGC--         U  UA-|          G     G   UGAUGAU 
                    UUCAGUGUG GA   AAGUGCUUACA UGCAG UAG       \
                    AGGUCGCAC CU   UUCACGAGUGU ACGUC AUC       A
CCGUCUAACCACUAGAAAAC         C  UUC^          G     -   CGGUCCA 
 120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-17-P1d_5p
mirBase accessionNone
Sequence 
0- UAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Mal-Mir-17-P1d_3p*
mirBase accessionNone
Sequence 
39- UACUGCAGUGUGAGCACUUCUUUC -63
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