MirGeneDB ID | Mal-Mir-17-P4a2 |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Asian swamp eel (Monopterus albus) |
MiRBase ID |
|
Paralogues |
Mal-Mir-17-P1a1
Mal-Mir-17-P1a2
Mal-Mir-17-P1d
Mal-Mir-17-P2a2a
Mal-Mir-17-P2a2b
Mal-Mir-17-P4a1
Mal-Mir-17-P4c
Mal-Mir-17-P4d
|
Orthologues |
Aca-Mir-17-P4a
Ami-Mir-17-P4a
Bta-Mir-17-P4a
Cfa-Mir-17-P4a
Cli-Mir-17-P4a
Cmi-Mir-17-P4a
Cpi-Mir-17-P4a
Cpo-Mir-17-P4a
Dno-Mir-17-P4a
Dre-Mir-17-P4a2
Ete-Mir-17-P4a
Gga-Mir-17-P4a
Gja-Mir-17-P4a
Gmo-Mir-17-P4a2
Hsa-Mir-17-P4a
Lch-Mir-17-P4a
Loc-Mir-17-P4a
Mdo-Mir-17-P4a
Mml-Mir-17-P4a
Mmu-Mir-17-P4a
Mun-Mir-17-P4a
Ocu-Mir-17-P4a
Pbv-Mir-17-P4a
Rno-Mir-17-P4a
Sha-Mir-17-P4a
Spt-Mir-17-P4a
Sto-Mir-17-P4a
Tgu-Mir-17-P4a
Tni-Mir-17-P4a2
Xtr-Mir-17-P4a
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_001952655.1_M_albus_1.0_genomic) |
KV884718.1: 1737279-1737339 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUAUAUCAUAAGGACAGGUUUCAGUAGUAUUAAAGUGCUUAUAGUGCAGGUAGUUUUUAUGAAAUUCUACUGCAUUGUGAGCACUUAAAGUACUUCUAGAUGCGAGUCUCUGCAUGGAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUAUAUCAUAAGGACAG- U - U A-| G UUUUUA
GU UC AG AGUAUU AAGUGCUUAUAGUGCAG UAG \
CG AG UC UCAUGA UUCACGAGUGUUACGUC AUC U
AAAAGGUACGUCUCUGAG U A U AA^ - UUAAAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Mal-Mir-17-P4a2_5p |
mirBase accession | None |
Sequence |
0- UAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
|
Star sequence |
Mal-Mir-17-P4a2_3p* |
mirBase accession | None |
Sequence |
38- ACUGCAUUGUGAGCACUUAAAGU -61
Get sequence
|