MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-17-P4a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-17-P1a  Sha-Mir-17-P1c  Sha-Mir-17-P2a  Sha-Mir-17-P2c  Sha-Mir-17-P4c  Sha-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)
GL849858.1: 3486664-3486722 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCACUUGAAAGGACAGCUUUUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUGAAGUACUGCUAGCUGUAGAACUACAACUUCAUCG
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Structure
        10            20        30         40        50         
GUGCACUUGAAAGGACA----|  UUU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     A
GCUACUUCAACAUCAAGAUGU^  U--    A   AG                 -   UAUUG 
       110       100          90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-17-P4a_5p

mirBase accessionNone
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Sha-Mir-17-P4a_3p*

mirBase accessionNone
Sequence
36- ACUGCAUUAUGAGCACUUGAAGU -59
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