Mir-17-P4a

MirGeneDB ID

Sha-Mir-17-P4a

Family name

MIR-17 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-17-P1a Sha-Mir-17-P1c Sha-Mir-17-P2a Sha-Mir-17-P2c Sha-Mir-17-P4c Sha-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL849858.1: 3486664-3486722 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4a)

Mir-92-P1a GL849858.1: 3486412-3486470 [-] UCSC Ensembl
Mir-19-P2a GL849858.1: 3486529-3486590 [-] UCSC Ensembl
Mir-17-P4a GL849858.1: 3486664-3486722 [-] UCSC Ensembl
Mir-19-P1a GL849858.1: 3486833-3486890 [-] UCSC Ensembl
Mir-17-P2a GL849858.1: 3486975-3487039 [-] UCSC Ensembl
Mir-17-P1a GL849858.1: 3487119-3487179 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GUGCACUUGAAAGGACAGCUUUUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUGAAGUACUGCUAGCUGUAGAACUACAACUUCAUCG

Get precursor sequence

Structure

        10            20        30         40        50         
GUGCACUUGAAAGGACA----|  UUU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     A
GCUACUUCAACAUCAAGAUGU^  U--    A   AG                 -   UAUUG 
       110       100          90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-17-P4a_5p

mirBase accession

None

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Star sequence

Sha-Mir-17-P4a_3p*

mirBase accession

None

Sequence

36- ACUGCAUUAUGAGCACUUGAAGU -59

Get sequence