MirGeneDB ID | Sto-Mir-17-P4a |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-17-P1a
Sto-Mir-17-P1b
Sto-Mir-17-P1c
Sto-Mir-17-P1d
Sto-Mir-17-P2a
Sto-Mir-17-P2c
Sto-Mir-17-P3b
Sto-Mir-17-P4b
Sto-Mir-17-P4c
|
Orthologues |
Aca-Mir-17-P4a
Ami-Mir-17-P4a
Bta-Mir-17-P4a
Cfa-Mir-17-P4a
Cli-Mir-17-P4a
Cmi-Mir-17-P4a
Cpi-Mir-17-P4a
Cpo-Mir-17-P4a
Dno-Mir-17-P4a
Dre-Mir-17-P4a1
Dre-Mir-17-P4a2
Ete-Mir-17-P4a
Gga-Mir-17-P4a
Gja-Mir-17-P4a
Gmo-Mir-17-P4a1
Gmo-Mir-17-P4a2
Hsa-Mir-17-P4a
Lch-Mir-17-P4a
Loc-Mir-17-P4a
Mal-Mir-17-P4a1
Mal-Mir-17-P4a2
Mdo-Mir-17-P4a
Mml-Mir-17-P4a
Mmu-Mir-17-P4a
Mun-Mir-17-P4a
Oan-Mir-17-P4a7
Oan-Mir-17-P4a8
Ocu-Mir-17-P4a
Pbv-Mir-17-P4a
Rno-Mir-17-P4a
Sha-Mir-17-P4a
Spt-Mir-17-P4a
Tgu-Mir-17-P4a
Tni-Mir-17-P4a1
Tni-Mir-17-P4a2
Xla-Mir-17-P4a3
Xla-Mir-17-P4a4
Xtr-Mir-17-P4a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01005422.1: 25312-25370 [-]
|
Precursor (pre-Mir +30nt flank) |
GCUGUUGGAGACUAAUAGCUCAAGCAGUAUUAAAGUGCUUAUAGUGCAGGUAGUGUUGCAGUAAUCUACUGCAAUAUAAGCACUUGAGUACUAUUGGCUAACACUGCAGCUGUACAAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
GCUGUUGGAGACUAAUA----| U GC A G G UGUUG
GC CAA AGUAUU AAGUGCUUAUA UGCAG UAG C
CG GUU UCAUGA UUCACGAAUAU ACGUC AUC A
UAAACAUGUCGACGUCACAAU^ - A- G A - UAAUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Sto-Mir-17-P4a_5p |
mirBase accession | None |
Sequence |
0- UAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
|
Star sequence |
Sto-Mir-17-P4a_3p* |
mirBase accession | None |
Sequence |
37- ACUGCAAUAUAAGCACUUGAGU -59
Get sequence
|