MirGeneDB 2.1
MirGeneDB ID

Sto-Mir-17-P4a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-17-P1a  Sto-Mir-17-P1b  Sto-Mir-17-P1c  Sto-Mir-17-P1d  Sto-Mir-17-P2a  Sto-Mir-17-P2c  Sto-Mir-17-P3b  Sto-Mir-17-P4b  Sto-Mir-17-P4c 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01005422.1: 25312-25370 [-]
Precursor
(pre-Mir +30nt flank)
GCUGUUGGAGACUAAUAGCUCAAGCAGUAUUAAAGUGCUUAUAGUGCAGGUAGUGUUGCAGUAAUCUACUGCAAUAUAAGCACUUGAGUACUAUUGGCUAACACUGCAGCUGUACAAAU
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Structure
        10            20        30        40        50         
GCUGUUGGAGACUAAUA----| U   GC      A           G     G   UGUUG 
                     GC CAA  AGUAUU AAGUGCUUAUA UGCAG UAG     C
                     CG GUU  UCAUGA UUCACGAAUAU ACGUC AUC     A
UAAACAUGUCGACGUCACAAU^ -   A-      G           A     -   UAAUG 
       110       100          90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Sto-Mir-17-P4a_5p
mirBase accessionNone
Sequence 
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Sto-Mir-17-P4a_3p*
mirBase accessionNone
Sequence 
37- ACUGCAAUAUAAGCACUUGAGU -59
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