MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-17-P1b

Family name MIR-17 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-17-P1a  Sto-Mir-17-P1c  Sto-Mir-17-P1d  Sto-Mir-17-P2a  Sto-Mir-17-P2c  Sto-Mir-17-P3b  Sto-Mir-17-P4a  Sto-Mir-17-P4b  Sto-Mir-17-P4c 
Orthologues Cmi-Mir-17-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01001891.1: 342587-342646 [+]
Clustered miRNAs
(< 50kb from Mir-17-P1b)		 Mir-17-P1b BFAA01001891.1: 342587-342646 [+]
Mir-17-P3b BFAA01001891.1: 345278-345340 [+]
Mir-17-P4b BFAA01001891.1: 346472-346531 [+]
Mir-19-P2b BFAA01001891.1: 347717-347779 [+]
Mir-92-P1b BFAA01001891.1: 348887-348945 [+]
Mir-92-P2b BFAA01001891.1: 349157-349216 [+]
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
CUAUUGUGCGGCCAUCUGUCCGAGUAGUGCCAAAGUGCUGACAGUGCAGGUAGUGAUGAGGCCUUCUACUGCAGUGUAAGCACUUAACGUACUCCUUGUGUACACCAUCUUCCCUGAAGC
Get precursor sequence
Structure
        10        20          30         40        50         
CUAUUGUGCGGCCAUCUGUC--    U     CA-|      G   G     G   UGAUG 
                      CGAG AGUGC   AAGUGCU ACA UGCAG UAG     A
                      GUUC UCAUG   UUCACGA UGU ACGUC AUC     G
CGAAGUCCCUUCUACCACAUGU    C     CAA^      A   G     -   UUCCG 
.       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Sto-Mir-17-P1b_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUGACAGUGCAGGUAG -23
Get sequence
Star sequence

Sto-Mir-17-P1b_3p*
mirBase accessionNone
Sequence 
37- ACUGCAGUGUAAGCACUUAACGU -60
Get sequence