MirGeneDB 2.1
MirGeneDB ID

Sto-Mir-17-P4b

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-17-P1a  Sto-Mir-17-P1b  Sto-Mir-17-P1c  Sto-Mir-17-P1d  Sto-Mir-17-P2a  Sto-Mir-17-P2c  Sto-Mir-17-P3b  Sto-Mir-17-P4a  Sto-Mir-17-P4c 
Orthologues Cmi-Mir-17-P4b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01001891.1: 346472-346531 [+]
Precursor
(pre-Mir +30nt flank)
AAAUGCAGGAGGGCUGUGUUCACGCAGCCCAAAAGUGCUUGUAGUGCAGGUAGUGGUAUUGAAACCUACUGCAGAACAAUCACUUUCAGCGCUACCUGAAUACAUGCGCCUGGACCACCU
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Structure
        10          20        30         40        50         
AAAUGCAGGAGGGCUGU--     CGC   CCA-|     C    AG     G   UGGUA 
                   GUUCA   AGC    AAAGUG UUGU  UGCAG UAG     U
                   UAAGU   UCG    UUUCAC AACA  ACGUC AUC     U
UCCACCAGGUCCGCGUACA     CCA   CGAC^     U    AG     -   CAAAG 
.       110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Sto-Mir-17-P4b_5p
mirBase accessionNone
Sequence 
0- AAAAGUGCUUGUAGUGCAGGUAG -23
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Star sequence

Sto-Mir-17-P4b_3p*
mirBase accessionNone
Sequence 
37- ACUGCAGAACAAUCACUUUCAGC -60
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