MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-17-P4b

Family name MIR-17 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-17-P1a  Cmi-Mir-17-P1b  Cmi-Mir-17-P1c  Cmi-Mir-17-P1d  Cmi-Mir-17-P2a  Cmi-Mir-17-P2c  Cmi-Mir-17-P3b  Cmi-Mir-17-P4a  Cmi-Mir-17-P4c  Cmi-Mir-17-P4d 
Orthologues Sto-Mir-17-P4b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635855.1: 9358118-9358178 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4b)		 Mir-17-P1b KI635855.1: 9354316-9354375 [+] UCSC Ensembl
Mir-17-P3b KI635855.1: 9356646-9356708 [+] UCSC Ensembl
Mir-17-P4b KI635855.1: 9358118-9358178 [+] UCSC Ensembl
Mir-19-P2b KI635855.1: 9358429-9358492 [+] UCSC Ensembl
Mir-92-P1b KI635855.1: 9359483-9359541 [+] UCSC Ensembl
Mir-92-P2b KI635855.1: 9359771-9359830 [+] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UUCCAAUGGUGGAUUGUGUCUGAGCAGUCCAAAAGUGCUUGUAGUGCAGGUAGUUGGCAUUGAUUCCUACUGCAGAACAAUCACUUUCAGAGCUGCUUAUGACCCGAGCGCCUUGAGAAGU
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Structure
        10         20          30        40        50          
UUCCAAUGGUGGAUUGU-   -       -| CA      C    AG     G   UUGGCA 
                  GUC UGAGCAG UC  AAAGUG UUGU  UGCAG UAG      \
                  CAG AUUCGUC AG  UUUCAC AACA  ACGUC AUC      U
UGAAGAGUUCCGCGAGCC   U       G^ AC      U    AG     -   CUUAGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-17-P4b_5p
mirBase accessionNone
Sequence 
0- AAAAGUGCUUGUAGUGCAGGUAG -23
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Star sequence

Cmi-Mir-17-P4b_3p*
mirBase accessionNone
Sequence 
38- ACUGCAGAACAAUCACUUUCAGA -61
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