Mir-17-P4a

MirGeneDB ID

Cmi-Mir-17-P4a

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-17-P1a Cmi-Mir-17-P1b Cmi-Mir-17-P1c Cmi-Mir-17-P1d Cmi-Mir-17-P2a Cmi-Mir-17-P2c Cmi-Mir-17-P3b Cmi-Mir-17-P4b Cmi-Mir-17-P4c Cmi-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cli-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635908.1: 307386-307446 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGACCAACAUUAUAUUAGCCAAAGCAAUAAUAAAGUGCUUAUAGUGCAGGUAGUGUUUAUAGUAAUCUACUGCAAUAUGAGCACUUGAAGUACUGCUGGCUAUUGAGCUACAUUUUAUUUG

Get precursor sequence

Structure

        10            20        30         40        50          
UGACCAACAUUAUAUUA----|   AA   A  AUA-           G     G   UGUUUA 
                     GCCA  GCA UA    AAGUGCUUAUA UGCAG UAG      \
                     CGGU  CGU AU    UUCACGAGUAU ACGUC AUC      U
GUUUAUUUUACAUCGAGUUAU^   --   C  GAAG           A     -   UAAUGA 
 .       110       100          90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-17-P4a_5p

mirBase accession

None

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Star sequence

Cmi-Mir-17-P4a_3p*

mirBase accession

None

Sequence

38- ACUGCAAUAUGAGCACUUGAAGU -61

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