MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-17-P4a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-20a
Paralogues Cfa-Mir-17-P1a  Cfa-Mir-17-P1c  Cfa-Mir-17-P1d  Cfa-Mir-17-P2a  Cfa-Mir-17-P2c  Cfa-Mir-17-P4c  Cfa-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)
chr22: 42478462-42478520 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a)
Mir-17-P1a chr22: 42478013-42478072 [+] UCSC Ensembl
Mir-17-P2a chr22: 42478151-42478215 [+] UCSC Ensembl
Mir-19-P1a chr22: 42478298-42478355 [+] UCSC Ensembl
Mir-17-P4a chr22: 42478462-42478520 [+] UCSC Ensembl
Mir-19-P2a chr22: 42478597-42478657 [+] UCSC Ensembl
Mir-92-P1a chr22: 42478714-42478772 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUCUCUGACGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUCGUUAUCUACUGCAUUAUGAGCACUUAAAGUACUGCUAGCUGUAGAACUCCAGCUUCGGCC
Get precursor sequence
Structure
        10            20        30         40        50         
GUGUCUCUGACGUGACA----|  UCU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     C
CCGGCUUCGACCUCAAGAUGU^  U--    A   AA                 -   UAUUG 
       110       100          90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-17-P4a_5p

mirBase accessionMIMAT0006651
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-20a
miRDB: MIMAT0006651
Star sequence

Cfa-Mir-17-P4a_3p*

mirBase accessionNone
Sequence
36- ACUGCAUUAUGAGCACUUAAAGU -59
Get sequence