Mir-17-P4a

MirGeneDB ID

Cpo-Mir-17-P4a

Family name

MIR-17 (all species)

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-20a

Paralogues

Cpo-Mir-17-P1a Cpo-Mir-17-P1c Cpo-Mir-17-P1d Cpo-Mir-17-P2a Cpo-Mir-17-P2c Cpo-Mir-17-P4c Cpo-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_5: 32028969-32029027 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-17-P4a)

Mir-92-P1a scaffold_5: 32028701-32028759 [-] UCSC
Mir-19-P2a scaffold_5: 32028817-32028877 [-] UCSC
Mir-17-P4a scaffold_5: 32028969-32029027 [-] UCSC
Mir-19-P1a scaffold_5: 32029133-32029190 [-] UCSC
Mir-17-P2a scaffold_5: 32029271-32029335 [-] UCSC
Mir-17-P1a scaffold_5: 32029418-32029477 [-] UCSC

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GGUGUAUCUGAUGUGACAGCUUUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUCAGUUAUCUACUGCAUUAUGAGCACUUAAAGUACUGCUCGCUGUAGAACUCCAGCUUCGGCC

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Structure

        10           20        30         40        50         
GGUGUAUCUGAUGUGAC---|  UUU    C   A-                 G   UGUUC 
                    AGC   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                    UCG   CGUC UGA  UUCACGAGUAUUACGUC AUC     A
CCGGCUUCGACCUCAAGAUG^  CU-    A   AA                 -   UAUUG 
       110       100         90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Mature sequence

Cpo-Mir-17-P4a_5p

mirBase accession

MIMAT0046868

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

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Star sequence

Cpo-Mir-17-P4a_3p*

mirBase accession

MIMAT0046869

Sequence

36- ACUGCAUUAUGAGCACUUAAAGU -59

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