MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-17-P4c

Family name MIR-17 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-20b
Paralogues Cpo-Mir-17-P1a  Cpo-Mir-17-P1c  Cpo-Mir-17-P1d  Cpo-Mir-17-P2a  Cpo-Mir-17-P2c  Cpo-Mir-17-P4a  Cpo-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cja-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pab-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_128: 2512679-2512739 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-17-P4c)		 Mir-92-P2c scaffold_128: 2512251-2512315 [-] UCSC
Mir-92-P1c scaffold_128: 2512411-2512471 [-] UCSC
Mir-19-P2c scaffold_128: 2512548-2512615 [-] UCSC
Mir-17-P4c scaffold_128: 2512679-2512739 [-] UCSC
Mir-17-P2c scaffold_128: 2512897-2512961 [-] UCSC
Mir-17-P1c scaffold_128: 2513060-2513118 [-] UCSC
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
ACAAAGCAUAAGUGUGGUUCCUAGUAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUUACUCUACUGUAGUGUGGGCACUUCCAGUACUCUUGGAUAACGAAUCUCUUGUUGAUGG
Get precursor sequence
Structure
        10           20        30         40        50          
ACAAAGCAUAAGUGUGGU---|  U  U     CA-           G     G   UUUUGG 
                     UCC AG AGUAC   AAGUGCUCAUA UGCAG UAG      \
                     AGG UC UCAUG   UUCACGGGUGU AUGUC AUC      C
GGUAGUUGUUCUCUAAGCAAU^  U  -     ACC           G     -   UCAUUA 
 .       110       100         90        80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-17-P4c_5p
mirBase accessionMIMAT0046870
Sequence 
0- CAAAGUGCUCAUAGUGCAGGUAGU -24
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Star sequence

Cpo-Mir-17-P4c_3p* (predicted)
mirBase accessionMIMAT0046871
Sequence 
37- UACUGUAGUGUGGGCACUUCCAGU -61
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