Mir-17-P4c

MirGeneDB ID

Mmu-Mir-17-P4c

Family name

MIR-17 (all species)

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-20b

Paralogues

Mmu-Mir-17-P1a Mmu-Mir-17-P1c Mmu-Mir-17-P1d Mmu-Mir-17-P2a Mmu-Mir-17-P2c Mmu-Mir-17-P4a Mmu-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chrX: 52742121-52742181 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c chrX: 52741697-52741761 [-] UCSC Ensembl
Mir-92-P1c chrX: 52741853-52741913 [-] UCSC Ensembl
Mir-19-P2c chrX: 52741991-52742056 [-] UCSC Ensembl
Mir-17-P4c chrX: 52742121-52742181 [-] UCSC Ensembl
Mir-17-P2c chrX: 52742341-52742403 [-] UCSC Ensembl
Mir-17-P1c chrX: 52742505-52742563 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

UAGAAGAACAAGCUCGGAUCCUAGUAGUGCCAAAGUGCUCAUAGUGCAGGUAGUUUUUAUACCACUCUACUGCAGUGUGAGCACUUCUAGUACUCCUGGAUCAACCAAGGUCUUGUUGAAG

Get precursor sequence

Structure

        10           20        30         40        50          
UAGAAGAACAAGCUCGG---|   U  U     CA-           G     G   UUUUUA 
                    AUCC AG AGUGC   AAGUGCUCAUA UGCAG UAG      \
                    UAGG UC UCAUG   UUCACGAGUGU ACGUC AUC      U
GAAGUUGUUCUGGAACCAAC^   -  C     AUC           G     -   UCACCA 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-17-P4c_5p

mirBase accession

MIMAT0003187

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0003187
TargetScanVert: mmu-miR-20b-5p
miRDB: MIMAT0003187

Star sequence

Mmu-Mir-17-P4c_3p*

mirBase accession

MIMAT0004788

Sequence

38- ACUGCAGUGUGAGCACUUCUAGU -61

Get sequence

Proposed targets

microrna.org: MIMAT0004788
TargetScanVert: mmu-miR-20b-3p
miRDB: MIMAT0004788