MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-17-P1d

Family name MIR-17 (all species)
Seed AAAGUGC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-106b
Paralogues Mmu-Mir-17-P1a  Mmu-Mir-17-P1c  Mmu-Mir-17-P2a  Mmu-Mir-17-P2c  Mmu-Mir-17-P4a  Mmu-Mir-17-P4c  Mmu-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Ocu-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr5: 138165746-138165807 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)
Mir-92-P2d chr5: 138165332-138165391 [-] UCSC Ensembl
Mir-17-P4d chr5: 138165535-138165596 [-] UCSC Ensembl
Mir-17-P1d chr5: 138165746-138165807 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCUUCCCUCCUACCAGCCCUGCUGGGACUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCUGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACGUGCAACGCCCAUGGAG
Get precursor sequence
Structure
        10          20         30        40        50          
CUCCUUCCCUCCUACCA--          -|ACUA       G       AGAUAGUGGUCC 
                   GCCCUGCUGG G    AAGUGCU ACAGUGC            \
                   CGGGACGACC C    UUCAUGG UGUCACG            U
GAGGUACCCGCAACGUGCA          U^GUCG       G       CCAUCGUGUCUC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere are Dicer cuts +1 and +2.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-17-P1d_5p

mirBase accessionMIMAT0000386
Sequence
0- UAAAGUGCUGACAGUGCAGAUA -22
Get sequence
Proposed targets microrna.org: MIMAT0000386
TargetScanVert: mmu-miR-106b-5p
miRDB: MIMAT0000386
Star sequence

Mmu-Mir-17-P1d_3p*

mirBase accessionMIMAT0004582
Sequence
40- CCGCACUGUGGGUACUUGCUGC -62
Get sequence
Proposed targets microrna.org: MIMAT0004582
TargetScanVert: mmu-miR-106b-3p
miRDB: MIMAT0004582