MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-17-P1d

Family name MIR-17 (all species)
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-106b
Paralogues Cpi-Mir-17-P1a  Cpi-Mir-17-P1c  Cpi-Mir-17-P2a  Cpi-Mir-17-P2c  Cpi-Mir-17-P4a  Cpi-Mir-17-P4c  Cpi-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH585351: 78141-78202 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-17-P4d JH585351: 77950-78010 [-] UCSC Ensembl
Mir-17-P1d JH585351: 78141-78202 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
GGGGCGGCACCGUUCCCGGCUCCGCAGGGCUAAAGUGCUGACAGUGCAGGUAGCUAGCGUCUGGUUGCUACUGCAGUGUGGGGGCUUGCAGCUCUGGGGGGCCACUGGCAUCGGCGGAUUGC
Get precursor sequence
Structure
        10          20        30         40        50        60
GGGGCGGCACCGUUCCC--      G       A-|   G  G   G     G   CUAGCG 
                   GGCUCC CAGGGCU  AAGU CU ACA UGCAG UAG      U
                   CCGGGG GUCUCGA  UUCG GG UGU ACGUC AUC      C
CGUUAGGCGGCUACGGUCA      G       CG^   G  G   G     -   GUUGGU 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Te Te Te To
Mature sequence

Cpi-Mir-17-P1d_5p
mirBase accessionMIMAT0037722
Sequence 
0- UAAAGUGCUGACAGUGCAGGUAG -23
Get sequence
Star sequence

Cpi-Mir-17-P1d_3p*
mirBase accessionNone
Sequence 
38- UACUGCAGUGUGGGGGCUUGCAGC -62
Get sequence