MirGeneDB 2.1
MirGeneDB ID

Mml-Mir-17-P1d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-106b
Paralogues Mml-Mir-17-P1a  Mml-Mir-17-P1c  Mml-Mir-17-P2a  Mml-Mir-17-P2c  Mml-Mir-17-P4a  Mml-Mir-17-P4c  Mml-Mir-17-P4d 
Orthologues Ami-Mir-17-P1d  Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rheMac8_trace)		 chr3: 125615411-125615472 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-92-P2d chr3: 125614985-125615044 [-] UCSC Ensembl
Mir-17-P4d chr3: 125615187-125615248 [-] UCSC Ensembl
Mir-17-P1d chr3: 125615411-125615472 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUCCCUCCCGCUCCAGCCCUGCUGGGGCUAAAGUGCUGACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGUGGGUACUUGCUGCUCCAGCAGGGCACGCACAGCGUCCGUGGAG
Get precursor sequence
Structure
        10          20        30         40        50          
GAGUCCCUCCCGCUCCA--             UA-|      G       AGAUAGUGGUCC 
                   GCCCUGCUGGGGC   AAGUGCU ACAGUGC            \
                   CGGGACGACCUCG   UUCAUGG UGUCACG            U
GAGGUGCCUGCGACACGCA             UCG^      G       CCAUCGUGCCUC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere are Dicer cuts +1 and +2.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Mature sequence

Mml-Mir-17-P1d_5p
mirBase accessionMIMAT0002772
Sequence 
0- UAAAGUGCUGACAGUGCAGAU -21
Get sequence
Proposed targets TargetScanVert: mml-miR-106b-5p
Star sequence

Mml-Mir-17-P1d_3p*
mirBase accessionMIMAT0026601
Sequence 
40- CCGCACUGUGGGUACUUGCUGC -62
Get sequence
Proposed targets TargetScanVert: mml-miR-106b-3p