MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-17-P1d

Family name MIR-17 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-106
Paralogues Ami-Mir-17-P1a  Ami-Mir-17-P1c  Ami-Mir-17-P2a  Ami-Mir-17-P2c  Ami-Mir-17-P4a  Ami-Mir-17-P4c  Ami-Mir-17-P4d 
Orthologues Bta-Mir-17-P1d  Cfa-Mir-17-P1d  Cja-Mir-17-P1d  Cmi-Mir-17-P1d  Cpi-Mir-17-P1d  Cpo-Mir-17-P1d  Dno-Mir-17-P1d  Eca-Mir-17-P1d  Ete-Mir-17-P1d  Gmo-Mir-17-P1d  Hsa-Mir-17-P1d  Laf-Mir-17-P1d  Lch-Mir-17-P1d  Loc-Mir-17-P1d  Mal-Mir-17-P1d  Mml-Mir-17-P1d  Mmr-Mir-17-P1d  Mmu-Mir-17-P1d  Ocu-Mir-17-P1d  Pab-Mir-17-P1d  Rno-Mir-17-P1d  Sto-Mir-17-P1d  Tni-Mir-17-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017707610.1: 16544-16603 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-17-P1d)		 Mir-17-P4d NW_017707610.1: 16349-16408 [-] UCSC
Mir-17-P1d NW_017707610.1: 16544-16603 [-] UCSC
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UCGGCCCAGCCCCUCAUGGCAUCCCAGGGCUAAAGUGCUUGCAGUGCAGGUAGCUGGCGCUGGCGCUACUGCAGUGUGGGGGCUUGCAGCUCUGGGGAGCCCCUGGCAAUGGGGGCCAGG
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Structure
        10          20        30         40        50         
UCGGCCCAGCCCCUCAU--   AU         A-|   G  UG  G     G   CUGGC 
                   GGC  CCCAGGGCU  AAGU CU  CA UGCAG UAG     G
                   CCG  GGGUCUCGA  UUCG GG  GU ACGUC AUC     C
GGACCGGGGGUAACGGUCC   AG         CG^   G  GU  G     -   GCGGU 
.       110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
To
Mature sequence

Ami-Mir-17-P1d_5p (predicted)
mirBase accessionMIMAT0038120
Sequence 
0- UAAAGUGCUUGCAGUGCAGGUAG -23
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Star sequence

Ami-Mir-17-P1d_3p* (predicted)
mirBase accessionNone
Sequence 
37- ACUGCAGUGUGGGGGCUUGCAGC -60
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