MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-17-P4c

Family name MIR-17 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-17-P1a  Cmi-Mir-17-P1b  Cmi-Mir-17-P1c  Cmi-Mir-17-P1d  Cmi-Mir-17-P2a  Cmi-Mir-17-P2c  Cmi-Mir-17-P3b  Cmi-Mir-17-P4a  Cmi-Mir-17-P4b  Cmi-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cja-Mir-17-P4c  Cli-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pab-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635856.1: 9595093-9595152 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4c)		 Mir-92-P2c KI635856.1: 9594643-9594704 [-] UCSC Ensembl
Mir-92-P1c KI635856.1: 9594788-9594849 [-] UCSC Ensembl
Mir-19-P2c KI635856.1: 9594951-9595013 [-] UCSC Ensembl
Mir-17-P4c KI635856.1: 9595093-9595152 [-] UCSC Ensembl
Mir-19-P1c KI635856.1: 9595282-9595339 [-] UCSC Ensembl
Mir-17-P2c KI635856.1: 9595761-9595825 [-] UCSC Ensembl
Mir-17-P1c KI635856.1: 9595929-9595986 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UACAGGAACAUAAGACUGUCAGUGCAGUACCAAAGUGCUCAUAGUGCAGGUAGUAGCAAUGAAAUCUACUGUAAUGUGAGCACUUACAGUAAUGCCAGACACAAAGCACAGAAAACAGUU
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Structure
        10           20        30         40        50         
UACAGGAACAUAAGACU---|  AGU   G   CA-           G     G   UAGCA 
                    GUC   GCA UAC   AAGUGCUCAUA UGCAG UAG     A
                    CAG   CGU AUG   UUCACGAGUGU AUGUC AUC     U
UUGACAAAAGACACGAAACA^  AC-   A   ACA           A     -   UAAAG 
.       110       100         90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-17-P4c_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Cmi-Mir-17-P4c_3p*
mirBase accessionNone
Sequence 
37- ACUGUAAUGUGAGCACUUACAGU -60
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