Mir-19-P2c

MirGeneDB ID

Cmi-Mir-19-P2c

Family name

MIR-19 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-19-P1a-v1 Cmi-Mir-19-P1c Cmi-Mir-19-P2a Cmi-Mir-19-P2b Cmi-Mir-19-P2d

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635856.1: 9594951-9595013 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c KI635856.1: 9594643-9594704 [-] UCSC Ensembl
Mir-92-P1c KI635856.1: 9594788-9594849 [-] UCSC Ensembl
Mir-19-P2c KI635856.1: 9594951-9595013 [-] UCSC Ensembl
Mir-17-P4c KI635856.1: 9595093-9595152 [-] UCSC Ensembl
Mir-19-P1c KI635856.1: 9595282-9595339 [-] UCSC Ensembl
Mir-17-P2c KI635856.1: 9595761-9595825 [-] UCSC Ensembl
Mir-17-P1c KI635856.1: 9595929-9595986 [-] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

ACAUGCUUAUGUUGGUUACUGUUUCUAGUUAGUUUUGCAGGUUUGCAUUCAGCUGUCAAAGUACAAGUGCUGUGCAAAUCCAUGCAAAACUGACUGUAGCAGUUAGUAGCGUGAUUAGCAUUU

Get precursor sequence

Structure

        10           20        30         40         50        60 
ACAUGCUUAUGUUGGUU---      UC              -  -|     UU    UGUCAAA 
                    ACUGUU  UAGUUAGUUUUGCA GG UUUGCA  CAGC       \
                    UGACGA  GUCAGUCAAAACGU CC AAACGU  GUCG       G
UUUACGAUUAGUGCGAUGAU      U-              A  U^     --    UGAACAU 
 120       110       100         90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-19-P2c_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAGGUUUGCAUUCAGC -23

Get sequence

Mature sequence

Cmi-Mir-19-P2c_3p

mirBase accession

None

Sequence

40- UGUGCAAAUCCAUGCAAAACUGA -63

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