MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-19-P1a

Family name MIR-19 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-19-P1c  Cmi-Mir-19-P2a  Cmi-Mir-19-P2b  Cmi-Mir-19-P2c  Cmi-Mir-19-P2d 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cja-Mir-19-P1a  Cli-Mir-19-P1a  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Eca-Mir-19-P1a  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Hsa-Mir-19-P1a  Laf-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmr-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Neu-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pab-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Tgu-Mir-19-P1a  Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Xla-Mir-19-P1a3  Xla-Mir-19-P1a4  Xtr-Mir-19-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635908.1: 307245-307302 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1a-v1)		 Mir-17-P1a KI635908.1: 306927-306985 [+] UCSC Ensembl
Mir-17-P2a KI635908.1: 307076-307140 [+] UCSC Ensembl
Mir-19-P1a-v1 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-19-P1a-v2 KI635908.1: 307245-307302 [+] UCSC Ensembl
Mir-17-P4a KI635908.1: 307386-307446 [+] UCSC Ensembl
Mir-19-P2a KI635908.1: 307499-307558 [+] UCSC Ensembl
Mir-92-P1a KI635908.1: 307621-307678 [+] UCSC Ensembl
Variant

Cmi-Mir-19-P1a-v1
Seed GUGCAAA
Precursor
(pre-Mir +30nt flank)		 
CCAAAUAAAAACAAAUUGCAGUUCUCUGCUAGUUUUGCAUGGUUGCACUACAAGAAGAAAUUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGGCUGGUUUGACUACUUCGUGAAGA
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Structure
        10          20        30        40          50       
CCAAAUAAAAACAAAUUG--      U  GC             --|     U  AAGAA 
                    CAGUUC CU  UAGUUUUGCAUGG  UUGCAC AC     G
                    GUCGGG GG  GUCAAAACGUAUC  AACGUG UG     A
AGAAGUGCUUCAUCAGUUUG      U  UA             UA^     U  AUUAA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-19-P1a-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUUUUGCAUGGUUGCACUAC -21
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Mature sequence

Cmi-Mir-19-P1a-v1_3p
mirBase accessionNone
Sequence 
35- UGUGCAAAUCUAUGCAAAACUGA -58
Get sequence
Variant

Cmi-Mir-19-P1a-v2
Seed UGUGCAA
Precursor
(pre-Mir +30nt flank)		 
CCAAAUAAAAACAAAUUGCAGUUCUCUGCUAGUUUUGCAUGGUUGCACUACAAGAAGAAAUUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGGCUGGUUUGACUACUUCGUGAAGA
Get precursor sequence
Structure
        10          20        30        40          50       
CCAAAUAAAAACAAAUUG--      U  GC             --|     U  AAGAA 
                    CAGUUC CU  UAGUUUUGCAUGG  UUGCAC AC     G
                    GUCGGG GG  GUCAAAACGUAUC  AACGUG UG     A
AGAAGUGCUUCAUCAGUUUG      U  UA             UA^     U  AUUAA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-19-P1a-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUUUUGCAUGGUUGCACUACA -22
Get sequence
Mature sequence

Cmi-Mir-19-P1a-v2_3p
mirBase accessionNone
Sequence 
34- UUGUGCAAAUCUAUGCAAAACUGA -58
Get sequence