MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-19-P1a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-19a
Paralogues Xtr-Mir-19-P2a  Xtr-Mir-19-P2c 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Hsa-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tgu-Mir-19-P1a  Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Xla-Mir-19-P1a3  Xla-Mir-19-P1a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr2: 120020122-120020179 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1a)
Mir-92-P1a chr2: 120019748-120019807 [-] UCSC Ensembl
Mir-19-P2a chr2: 120019867-120019928 [-] UCSC Ensembl
Mir-17-P4a chr2: 120019995-120020054 [-] UCSC Ensembl
Mir-19-P1a chr2: 120020122-120020179 [-] UCSC Ensembl
Mir-17-P2a chr2: 120020263-120020327 [-] UCSC Ensembl
Mir-17-P1a chr2: 120020393-120020454 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCUUUUGCUACUUUGUGCAGUCUUCUGUUAGUUUUGCAUAGUUGCACUACAAGAAAAAUGUAGUUGUGCAAAUCUAUGCAAAACUGAUGGCAGCCUGUAUUGGCUGCAGUAGCAAGC
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Structure
        10          20        30        40          50       
GCCUUUUGCUACUUUGU--    U  U                 --|     U  AAGAA 
                   GCAG CU CUGUUAGUUUUGCAUAG  UUGCAC AC     A
                   UGUC GA GGUAGUCAAAACGUAUC  AACGUG UG     A
CGAACGAUGACGUCGGUUA    C  C                 UA^     U  AUGUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-19-P1a_5p*

mirBase accessionNone
Sequence
0- AGUUUUGCAUAGUUGCACUAC -21
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Mature sequence

Xtr-Mir-19-P1a_3p

mirBase accessionMIMAT0003566
Sequence
35- UGUGCAAAUCUAUGCAAAACUGA -58
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Proposed targets TargetScanVert: xtr-miR-19a