MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-19-P1a2

Family name MIR-19 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-19a-2
Paralogues Gmo-Mir-19-P1a1  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Gmo-Mir-19-P2c  Gmo-Mir-19-P2d 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cja-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a2  Eca-Mir-19-P1a  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Hsa-Mir-19-P1a  Laf-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmr-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Neu-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pab-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Tgu-Mir-19-P1a  Tni-Mir-19-P1a2  Xtr-Mir-19-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_918: 373145-373201 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1a2)		 Mir-17-P1a2 GeneScaffold_918: 372883-372941 [+] UCSC Ensembl
Mir-17-P2a2 GeneScaffold_918: 373010-373074 [+] UCSC Ensembl
Mir-19-P1a2 GeneScaffold_918: 373145-373201 [+] UCSC Ensembl
Mir-17-P4a2 GeneScaffold_918: 373326-373385 [+] UCSC Ensembl
Mir-19-P2a2 GeneScaffold_918: 373455-373516 [+] UCSC Ensembl
Mir-92-P1a2 GeneScaffold_918: 373563-373620 [+] UCSC Ensembl
Seed GUGCAAA
Precursor
(pre-Mir +30nt flank)		 
GUCUUCGGUGGUCUAAAACGGUUCACUGCCAGUUUUGCGUAGUUGCUCUGCAAGAAAAUUGAGUUGUGCAAAUCUAUGCAAAACUGACGGUGUACUGUGUCUCUGCAAAAUCAAGGG
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Structure
        10          20        30        40          50       
GUCUUCGGUGGUCUAAA--     U     C             --|   UCU  AAGAA 
                   ACGGU CACUG CAGUUUUGCGUAG  UUGC   GC     \
                   UGUCA GUGGC GUCAAAACGUAUC  AACG   UG     A
GGGAACUAAAACGUCUCUG     U     A             UA^   UGU  AGUUA 
     110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -2 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-19-P1a2_5p*
mirBase accessionMIMAT0044322
Sequence 
0- AGUUUUGCGUAGUUGCUCUGC -21
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Mature sequence

Gmo-Mir-19-P1a2_3p
mirBase accessionMIMAT0044303
Sequence 
34- UGUGCAAAUCUAUGCAAAACUGA -57
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