MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-19-P1a1

Family name MIR-19 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-19a-1
Paralogues Gmo-Mir-19-P1a2  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Gmo-Mir-19-P2c  Gmo-Mir-19-P2d 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cja-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Eca-Mir-19-P1a  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Hsa-Mir-19-P1a  Laf-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmr-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Neu-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pab-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Tgu-Mir-19-P1a  Tni-Mir-19-P1a1  Xtr-Mir-19-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_520: 24486-24543 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1a1)		 Mir-17-P1a1 GeneScaffold_520: 24224-24283 [+] UCSC Ensembl
Mir-17-P2a1 GeneScaffold_520: 24343-24407 [+] UCSC Ensembl
Mir-19-P1a1 GeneScaffold_520: 24486-24543 [+] UCSC Ensembl
Mir-17-P4a1 GeneScaffold_520: 24648-24707 [+] UCSC Ensembl
Mir-19-P2a1 GeneScaffold_520: 24765-24825 [+] UCSC Ensembl
Seed GUGCAAA
Precursor
(pre-Mir +30nt flank)		 
UUGGGCUCAAAUGUCUCGCAGUUCUCUGCUAGUUCUGCAUAGUUGCACUACAAGAAUAGAAGAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGCCUGCUUGUUCUCUGCCUGUCUCC
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Structure
        10          20        30        40          50       
UUGGGCUCAAAUGUCUC--    UU U  GC     C       --|     U  AAGAA 
                   GCAG  C CU  UAGUU UGCAUAG  UUGCAC AC     U
                   CGUC  G GG  GUCAA ACGUAUC  AACGUG UG     A
CCUCUGUCCGUCUCUUGUU    CG U  UA     A       UA^     U  AGAAG 
      110       100        90        80        70        60
Deep sequencing
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CommentThere are Drosha cuts -1 and -3 on the 5p arm.
3' NTU No
MotifsNo
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-19-P1a1_5p*
mirBase accessionMIMAT0044302
Sequence 
0- AGUUCUGCAUAGUUGCACUAC -21
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Mature sequence

Gmo-Mir-19-P1a1_3p
mirBase accessionMIMAT0044303
Sequence 
35- UGUGCAAAUCUAUGCAAAACUGA -58
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