Mir-19-P1a

MirGeneDB ID

Rno-Mir-19-P1a

Family name

MIR-19 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-19a

Paralogues

Rno-Mir-19-P2a Rno-Mir-19-P2c

Orthologues

Aca-Mir-19-P1a Ami-Mir-19-P1a Bta-Mir-19-P1a Cfa-Mir-19-P1a Cja-Mir-19-P1a Cli-Mir-19-P1a Cmi-Mir-19-P1a-v1 Cpi-Mir-19-P1a Cpo-Mir-19-P1a Dno-Mir-19-P1a Dre-Mir-19-P1a1 Dre-Mir-19-P1a2 Eca-Mir-19-P1a Ete-Mir-19-P1a Gga-Mir-19-P1a Gja-Mir-19-P1a Gmo-Mir-19-P1a1 Gmo-Mir-19-P1a2 Hsa-Mir-19-P1a Laf-Mir-19-P1a Lch-Mir-19-P1a Loc-Mir-19-P1a Mal-Mir-19-P1a2 Mdo-Mir-19-P1a Mml-Mir-19-P1a Mmr-Mir-19-P1a Mmu-Mir-19-P1a Mun-Mir-19-P1a Neu-Mir-19-P1a Oan-Mir-19-P1a Ocu-Mir-19-P1a Pab-Mir-19-P1a Pbv-Mir-19-P1a Sha-Mir-19-P1a Spt-Mir-19-P1a Sto-Mir-19-P1a-v1 Tgu-Mir-19-P1a Tni-Mir-19-P1a1 Tni-Mir-19-P1a2 Xla-Mir-19-P1a3 Xla-Mir-19-P1a4 Xtr-Mir-19-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr15: 100180175-100180232 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P1a)

Mir-17-P1a chr15: 100179892-100179951 [+] UCSC Ensembl
Mir-17-P2a chr15: 100180031-100180095 [+] UCSC Ensembl
Mir-19-P1a chr15: 100180175-100180232 [+] UCSC Ensembl
Mir-17-P4a chr15: 100180349-100180407 [+] UCSC Ensembl
Mir-19-P2a chr15: 100180479-100180539 [+] UCSC Ensembl
Mir-92-P1a chr15: 100180596-100180654 [+] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

UCUCAAUAGUUCUGUUUGCAGCCCUCUGUUCGUUUUGCAUAGUUGCACUACAAGAAGAAUGUAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGCCUGCUAUUUACUUCAAGUGUUGU

Get precursor sequence

Structure

        10          20        30        40          50       
UCUCAAUAGUUCUGUUU--    C  U     C           --|     U  AAGAA 
                   GCAG CC CUGUU GUUUUGCAUAG  UUGCAC AC     G
                   CGUC GG GGUAG CAAAACGUAUC  AACGUG UG     A
UGUUGUGAACUUCAUUUAU    C  U     U           UA^     U  AUGUA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-19-P1a_5p*

mirBase accession

MIMAT0017098

Sequence

0- CGUUUUGCAUAGUUGCACUAC -21

Get sequence

Proposed targets

TargetScanVert: rno-miR-19a-5p
miRDB: MIMAT0017098

Mature sequence

Rno-Mir-19-P1a_3p

mirBase accession

MIMAT0000789

Sequence

35- UGUGCAAAUCUAUGCAAAACUGA -58

Get sequence

Proposed targets

microrna.org: MIMAT0000789
TargetScanVert: rno-miR-19a-3p
miRDB: MIMAT0000789