MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-17-P2a

Family name MIR-17 (all species)
Seed AAGGUGC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-18a
Paralogues Rno-Mir-17-P1a  Rno-Mir-17-P1c  Rno-Mir-17-P1d  Rno-Mir-17-P2c  Rno-Mir-17-P4a  Rno-Mir-17-P4c  Rno-Mir-17-P4d 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pbv-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xtr-Mir-17-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr15: 100180031-100180095 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2a)
Mir-17-P1a chr15: 100179892-100179951 [+] UCSC Ensembl
Mir-17-P2a chr15: 100180031-100180095 [+] UCSC Ensembl
Mir-19-P1a chr15: 100180175-100180232 [+] UCSC Ensembl
Mir-17-P4a chr15: 100180349-100180407 [+] UCSC Ensembl
Mir-19-P2a chr15: 100180479-100180539 [+] UCSC Ensembl
Mir-92-P1a chr15: 100180596-100180654 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCCUGCUGGCGCUGCGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGACUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUCCUCAUCCAACCCGAG
Get precursor sequence
Structure
        10          20        30          40        50        60 
GGGCCUGCUGGCGCUGCGU--         U   --|  U   UC   U    A   UGAAGUA 
                     GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                     UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
GAGCCCAACCUACUCCUGUAU         C   CU^  U   GA   C    -   UACGAUC 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-17-P2a_5p

mirBase accessionMIMAT0000787
Sequence
0- UAAGGUGCAUCUAGUGCAGAUAG -23
Get sequence
Proposed targets microrna.org: MIMAT0000787
TargetScanVert: rno-miR-18a-5p
miRDB: MIMAT0000787
Star sequence

Rno-Mir-17-P2a_3p*

mirBase accessionMIMAT0017095
Sequence
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
Get sequence
Proposed targets TargetScanVert: rno-miR-18a-3p
miRDB: MIMAT0017095