MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-17-P2a

Family name MIR-17 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-18a
Paralogues Eca-Mir-17-P1a  Eca-Mir-17-P1c  Eca-Mir-17-P1d  Eca-Mir-17-P2c  Eca-Mir-17-P4a  Eca-Mir-17-P4c  Eca-Mir-17-P4d 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cja-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Laf-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmr-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Neu-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pab-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xtr-Mir-17-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009164.1: 61685182-61685244 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2a)		 Mir-17-P1a CM009164.1: 61685042-61685103 [+] UCSC Ensembl
Mir-17-P2a CM009164.1: 61685182-61685244 [+] UCSC Ensembl
Mir-19-P1a CM009164.1: 61685331-61685388 [+] UCSC Ensembl
Mir-17-P4a CM009164.1: 61685496-61685554 [+] UCSC Ensembl
Mir-19-P2a CM009164.1: 61685631-61685691 [+] UCSC Ensembl
Mir-92-P1a CM009164.1: 61685748-61685806 [+] UCSC Ensembl
Seed AAGGUGC
Precursor
(pre-Mir +30nt flank)		 
GGGCCUGCUGGUGUUGAGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUUUUCAUCCAAUAAU
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Structure
        10        20        30          40        50        60 
GGGCCUGCUGGUGUUGAGU         U   --|  U   UC   U    A   UGAAGUA 
                   GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                   UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
UAAUAACCUACUUUUGUAU         C   CU^  U   GA   C    -   UACGAUU 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-17-P2a_5p
mirBase accessionMIMAT0013085
Sequence 
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Star sequence

Eca-Mir-17-P2a_3p*
mirBase accessionNone
Sequence 
41- ACUGCCCUAAGUGCUCCUUCUG -63
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