MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-17-P1c

Family name MIR-17 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-106a
Paralogues Eca-Mir-17-P1a  Eca-Mir-17-P1d  Eca-Mir-17-P2a  Eca-Mir-17-P2c  Eca-Mir-17-P4a  Eca-Mir-17-P4c  Eca-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 110759193-110759251 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c)		 Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UUUCGCUGCAGGAAUAGGCCUUGGCCAUGUCAAAGUGCUUACAGUGCAGGUAGCUUUCUGAGAUCUACUGCAAUGCAAGCACUUCUUACAUUACCAUGGUGAUUUAAUCCACGGCUCCU
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Structure
        10          20        30         40        50         
UUUCGCUGCAGGAAUAG--   U   CC    CA-|       A  G     G   CUUUC 
                   GCC UGG  AUGU   AAGUGCUU CA UGCAG UAG     \
                   UGG ACC  UACA   UUCACGAA GU ACGUC AUC     U
UCCUCGGCACCUAAUUUAG   U   AU    UUC^       C  A     -   UAGAG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-17-P1c_5p
mirBase accessionMIMAT0013194
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Eca-Mir-17-P1c_3p* (predicted)
mirBase accessionNone
Sequence 
36- ACUGCAAUGCAAGCACUUCUUAC -59
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