Mir-17-P1c

MirGeneDB ID

Oan-Mir-17-P1c

Family name

MIR-17 (all species)

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-106

Paralogues

Oan-Mir-17-P1a Oan-Mir-17-P2a Oan-Mir-17-P2c Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Oan-Mir-17-P4c

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041733.1: 24650384-24650441 [-]

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-92-P2c NC_041733.1: 24649599-24649663 [-]
Mir-92-P1c NC_041733.1: 24649741-24649802 [-]
Mir-19-P2c NC_041733.1: 24649885-24649944 [-]
Mir-17-P4c NC_041733.1: 24650009-24650072 [-]
Mir-17-P2c NC_041733.1: 24650219-24650283 [-]
Mir-17-P1c NC_041733.1: 24650384-24650441 [-]

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

AACUUGGUGUUGGAUAGGCCUUGGUUGUGCAAAAGUGCUUACAGUGCAGGUAGCUUUUAGUACCUACUGCAAUGUAAGCACUUCUAGCAUUACCAUGGCAAUUCAAUCAAUGAGUGCU

Get precursor sequence

Structure

        10          20        30         40        50        
AACUUGGUGUUGGAUAG--   U    U    AA-|          G     G   CUUU 
                   GCC UGGU GUGC   AAGUGCUUACA UGCAG UAG    U
                   CGG ACCA UACG   UUCACGAAUGU ACGUC AUC    A
UCGUGAGUAACUAACUUAA   U    U    AUC^          A     -   CAUG 
      110       100        90        80        70         60