| MirGeneDB ID | Spt-Mir-17-P1c |
|---|---|
| Family name | MIR-17 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-17-P1a Spt-Mir-17-P2a Spt-Mir-17-P2c Spt-Mir-17-P4a Spt-Mir-17-P4c |
| Orthologues | Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01011901.1: 25207986-25208045 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-17-P1c) |
Mir-17-P1c
QEPC01011901.1: 25207986-25208045 [+]
UCSC
Ensembl
Mir-17-P2c QEPC01011901.1: 25208168-25208232 [+] UCSC Ensembl Mir-17-P4c QEPC01011901.1: 25208361-25208422 [+] UCSC Ensembl Mir-19-P2c QEPC01011901.1: 25208490-25208549 [+] UCSC Ensembl Mir-92-P1c QEPC01011901.1: 25208662-25208723 [+] UCSC Ensembl Mir-92-P2c QEPC01011901.1: 25208800-25208864 [+] UCSC Ensembl |
| Seed | AAAGUGC |
| Precursor (pre-Mir +30nt flank) |
GAAGAUUCUUUGACAUGCCUUGAGUUUUGCAAAAGUGCUUACAGUGCAGGUAGCAUUUUUGGUAUCUACUGCAGUGUUAGCACUUCUAGUUUUACCAAGGCAAUCAGUCAGUGAUGGUUGGet precursor sequence |
| Structure | 10 20 30 40 50 GAAGAUUCUUUGACAUG---| A UUU AA- U G G CAUUU CCUUG GU GC AAGUGCU ACA UGCAG UAG U GGAAC CA UG UUCACGA UGU ACGUC AUC U GUUGGUAGUGACUGACUAAC^ - UUU AUC U G - UAUGG . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Spt-Mir-17-P1c_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
|
| Star sequence | Spt-Mir-17-P1c_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- ACUGCAGUGUUAGCACUUCUAGU -60
Get sequence
|
