MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-17-P1a  Spt-Mir-17-P2a  Spt-Mir-17-P2c  Spt-Mir-17-P4a  Spt-Mir-17-P4c 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01011901.1: 25207986-25208045 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGAUUCUUUGACAUGCCUUGAGUUUUGCAAAAGUGCUUACAGUGCAGGUAGCAUUUUUGGUAUCUACUGCAGUGUUAGCACUUCUAGUUUUACCAAGGCAAUCAGUCAGUGAUGGUUG
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Structure
        10           20        30         40        50         
GAAGAUUCUUUGACAUG---|    A  UUU  AA-       U   G     G   CAUUU 
                    CCUUG GU   GC   AAGUGCU ACA UGCAG UAG     U
                    GGAAC CA   UG   UUCACGA UGU ACGUC AUC     U
GUUGGUAGUGACUGACUAAC^    -  UUU  AUC       U   G     -   UAUGG 
.       110       100         90        80        70         60
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Spt-Mir-17-P1c_5p (predicted)

mirBase accessionNone
Sequence
0- AAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Spt-Mir-17-P1c_3p* (predicted)

mirBase accessionNone
Sequence
37- ACUGCAGUGUUAGCACUUCUAGU -60
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