Mir-17-P1c

MirGeneDB ID

Ocu-Mir-17-P1c

Family name

MIR-17 (all species)

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-106a

Paralogues

Ocu-Mir-17-P1a Ocu-Mir-17-P1d Ocu-Mir-17-P2a Ocu-Mir-17-P2c Ocu-Mir-17-P4a Ocu-Mir-17-P4c Ocu-Mir-17-P4d

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(oryCun2_add)

chrX: 108519035-108519093 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-92-P2c chrX: 108518210-108518274 [-] UCSC Ensembl
Mir-92-P1c chrX: 108518367-108518428 [-] UCSC Ensembl
Mir-19-P2c chrX: 108518503-108518568 [-] UCSC Ensembl
Mir-17-P4c chrX: 108518632-108518692 [-] UCSC Ensembl
Mir-17-P2c chrX: 108518869-108518933 [-] UCSC Ensembl
Mir-17-P1c chrX: 108519035-108519093 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

UUGUGCUGCAGGAAUGGGCCUUGGCCAUGUAAAAGUGCUUACAGUGCAGGUAGCUUUUUGAGAUCUACUGCAAUGCGAGCACUUCUUACAUUACCAUGGUGAUAUAAUCAGUGACGACU

Get precursor sequence

Structure

        10          20        30         40        50         
UUGUGCUGCAGGAAUGG--   U   CC      -|      UA  G     G   CUUUU 
                   GCC UGG  AUGUAA AAGUGCU  CA UGCAG UAG     \
                   UGG ACC  UACAUU UUCACGA  GU ACGUC AUC     U
UCAGCAGUGACUAAUAUAG   U   AU      C^      GC  A     -   UAGAG 
       110       100        90        80        70         60