MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-17-P4d

Family name MIR-17 (all species)
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-93
Paralogues Ocu-Mir-17-P1a  Ocu-Mir-17-P1c  Ocu-Mir-17-P1d  Ocu-Mir-17-P2a  Ocu-Mir-17-P2c  Ocu-Mir-17-P4a  Ocu-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)		 chrUn0062: 102971-103032 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-17-P1d chrUn0062: 102749-102810 [+] UCSC Ensembl
Mir-17-P4d chrUn0062: 102971-103032 [+] UCSC Ensembl
Mir-92-P2d chrUn0062: 103178-103237 [+] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UCACAUCUCGGACCUUAGUCCCGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCUGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCUGGGACACAGCCUCUCUGCCAACCG
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Structure
        10          20        30          40        50        60
UCACAUCUCGGACCUUA--             CA-       -|    U    G   UGUGAU 
                   GUCCCGGGGGCUC   AAGUGCU GUUCG GCAG UAG      U
                   CAGGGUCCCCGAG   UUCACGA CGAGU CGUC AUC      A
GCCAACCGUCUCUCCGACA             CCC       U^    -    -   CAGUCC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
He Ki Te To Wh
Mature sequence

Ocu-Mir-17-P4d_5p
mirBase accessionMIMAT0048176
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
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Star sequence

Ocu-Mir-17-P4d_3p*
mirBase accessionMIMAT0048177
Sequence 
39- ACUGCUGAGCUAGCACUUCCCGA -62
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