MirGeneDB 3.0
MirGeneDB ID

Ete-Mir-17-P4d

Family name MIR-17 (all species)
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-17-P1a  Ete-Mir-17-P1c  Ete-Mir-17-P1d  Ete-Mir-17-P2a  Ete-Mir-17-P2c  Ete-Mir-17-P4a  Ete-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(echTel2)		 JH980314: 10057600-10057660 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-92-P2d JH980314: 10057391-10057450 [-] UCSC
Mir-17-P4d JH980314: 10057600-10057660 [-] UCSC
Mir-17-P1d JH980314: 10057777-10057838 [-] UCSC
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
AUGCAUCUUGGACAUUAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCUGAGACACAACCUCUCCACCCAUCA
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Structure
        10          20        30          40        50          
AUGCAUCUUGGACAUUA--   CU        CA-       -|    U    G   UGUGAU 
                   GUC  GGGGGCUC   AAGUGCU GUUCG GCAG UAG      \
                   CAG  UCCCCGAG   UUCACGA CGAGU CGUC AUC      U
ACUACCCACCUCUCCAACA   AG        CCC       U^    -    -   CAGCCA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Ete-Mir-17-P4d_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
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Star sequence

Ete-Mir-17-P4d_3p*
mirBase accessionNone
Sequence 
38- ACUGCUGAGCUAGCACUUCCCGA -61
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