MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-17-P4d

Family name MIR-17 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-17-P1a  Loc-Mir-17-P1c  Loc-Mir-17-P1d  Loc-Mir-17-P2a  Loc-Mir-17-P2c  Loc-Mir-17-P4a  Loc-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG2: 57218016-57218076 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-92-P2d LG2: 57216723-57216782 [-] Ensembl
Mir-19-P2d LG2: 57217593-57217657 [-] Ensembl
Mir-17-P4d LG2: 57218016-57218076 [-] Ensembl
Mir-17-P1d LG2: 57218139-57218200 [-] Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
GCCUUCAGAGGAGAACGGCCCCUGGGUGCCCAAAGUGCUGUUUGUGCAGGUAGCUAACCUGAGAGCCUACUGCAAAACCAGCACUUCCCGACACACAGAGGCACUGCACUUCUCCUGAGAA
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Structure
        10          20        30         40        50          
GCCUUCAGAGGAGAACG--   C   G   CCCA-|       U  G     G   CUAACC 
                   GCC CUG GUG     AAGUGCUG UU UGCAG UAG      \
                   CGG GAC CAC     UUCACGAC AA ACGUC AUC      U
AAGAGUCCUCUUCACGUCA   A   A   AGCCC^       C  A     -   CGAGAG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-17-P4d_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUGUUUGUGCAGGUAG -23
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Star sequence

Loc-Mir-17-P4d_3p*
mirBase accessionNone
Sequence 
38- ACUGCAAAACCAGCACUUCCCGA -61
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