MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-17-P4d

Family name MIR-17 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-17-P1a  Pab-Mir-17-P1c  Pab-Mir-17-P1d  Pab-Mir-17-P2a  Pab-Mir-17-P2c  Pab-Mir-17-P4a  Pab-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054685.2: 9846398-9846459 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-92-P2d CM054685.2: 9846193-9846252 [-] UCSC Ensembl
Mir-17-P4d CM054685.2: 9846398-9846459 [-] UCSC Ensembl
Mir-17-P1d CM054685.2: 9846624-9846685 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UCCCGUCUUGGACCUCAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCCGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCCGGGACACGUUCUCUCUGCCAAUUG
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Structure
        10          20        30          40        50        60
UCCCGUCUUGGACCUCA--             CA-       -|    U    G   UGUGAU 
                   GUCCUGGGGGCUC   AAGUGCU GUUCG GCAG UAG      U
                   CAGGGCCCCCGAG   UUCACGA CGAGU CGUC AUC      A
GUUAACCGUCUCUCUUGCA             CCC       U^    -    -   CAGCCC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Br Br Li Li
Mature sequence

Pab-Mir-17-P4d_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
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Star sequence

Pab-Mir-17-P4d_3p*
mirBase accessionNone
Sequence 
39- ACUGCUGAGCUAGCACUUCCCGA -62
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