Mir-17-P4d

MirGeneDB ID

Gmo-Mir-17-P4d

Family name

MIR-17 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-93

Paralogues

Gmo-Mir-17-P1a1 Gmo-Mir-17-P1a2 Gmo-Mir-17-P1d Gmo-Mir-17-P2a1 Gmo-Mir-17-P2a2 Gmo-Mir-17-P2c Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Gmo-Mir-17-P4c

Orthologues

Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cja-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Hsa-Mir-17-P4d Laf-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Pab-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4 Xtr-Mir-17-P4d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_3767: 173469-173529 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4d)

Mir-92-P2d GeneScaffold_3767: 173042-173101 [-] UCSC Ensembl
Mir-19-P2d GeneScaffold_3767: 173195-173260 [-] UCSC Ensembl
Mir-17-P4d GeneScaffold_3767: 173469-173529 [-] UCSC Ensembl
Mir-17-P1d GeneScaffold_3767: 173694-173755 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

CAUCAGCGUGUCGAUUCGCUCCCCGGUGUCAAAAGUGCUGUUUGUGCAGGUAGAAGAGUCACCCUUCCUACUGCAAAACCAGCACUUAAGGCCCACGGGUUAGCCAUGUUCUACGUCUGAA

Get precursor sequence

Structure

        10        20          30        40        50        60
CAUCAGCGUGUCGAUUCGCUC-    GU-|  AA        U  G     G   AAGAGU 
                      CCCG   GUC  AAGUGCUG UU UGCAG UAG      C
                      GGGC   CGG  UUCACGAC AA ACGUC AUC      A
AAGUCUGCAUCUUGUACCGAUU    ACC^  AA        C  A     -   CUUCCC 
 .       110       100        90        80         70