MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-17-P4d

Family name MIR-17 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-93a
Paralogues Xtr-Mir-17-P1a  Xtr-Mir-17-P1c  Xtr-Mir-17-P2a  Xtr-Mir-17-P2c  Xtr-Mir-17-P4a  Xtr-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chrUn_NW_016683390v1: 107136-107196 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-92-P2d chrUn_NW_016683390v1: 107010-107067 [-] UCSC Ensembl
Mir-17-P4d chrUn_NW_016683390v1: 107136-107196 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
GUCCAUUCCAUCAGAUUGUCCUAUGGGCUUCAAAGUGCUGUUCGUGCAGGUAGCUUAAUAACAGACCUACUGCAUGGGCGGCACUUCCCAAGCCCAUUGUGACCCUACACGUCGGACCCAU
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Structure
        10         20         30         40        50          
GUCCAUUCCAUCAGAUU-   CU-        CA-|                G   CUUAAU 
                  GUC   AUGGGCUU   AAGUGCUGUUCGUGCAG UAG      \
                  CAG   UACCCGAA   UUCACGGCGGGUACGUC AUC      A
UACCCAGGCUGCACAUCC   UGU        CCC^                -   CAGACA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-17-P4d_5p
mirBase accessionMIMAT0003659
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
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Proposed targets TargetScanVert: xtr-miR-93a
Star sequence

Xtr-Mir-17-P4d_3p*
mirBase accessionNone
Sequence 
38- ACUGCAUGGGCGGCACUUCCCAA -61
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