Mir-17-P4a

MirGeneDB ID

Xtr-Mir-17-P4a

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-20a

Paralogues

Xtr-Mir-17-P1a Xtr-Mir-17-P1c Xtr-Mir-17-P2a Xtr-Mir-17-P2c Xtr-Mir-17-P4c Xtr-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr2: 120019995-120020054 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4a)

Mir-92-P1a chr2: 120019748-120019807 [-] UCSC Ensembl
Mir-19-P2a chr2: 120019867-120019928 [-] UCSC Ensembl
Mir-17-P4a chr2: 120019995-120020054 [-] UCSC Ensembl
Mir-19-P1a chr2: 120020122-120020179 [-] UCSC Ensembl
Mir-17-P2a chr2: 120020263-120020327 [-] UCSC Ensembl
Mir-17-P1a chr2: 120020393-120020454 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACACUGUACCAUUUUGGCUAAAGUGGUGCUAAAGUGCUUAUAGUGCAGGUAGUUUUUCUGUAUUCUACUGCAUAAUGAGCACUUAAAGUACUCCUAGCUGCAUGCCGACCCAAUCAGUC

Get precursor sequence

Structure

        10            20        30         40        50         
CACACUGUACCAUUUUG----|  AA  UG     A-          A      G   UUUUU 
                     GCU  AG  GUGCU  AAGUGCUUAU GUGCAG UAG     C
                     CGA  UC  CAUGA  UUCACGAGUA UACGUC AUC     U
CUGACUAACCCAGCCGUACGU^  --  CU     AA          A      -   UUAUG 
.       110       100          90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Em	Em	Em	Em	He

Mature sequence

Xtr-Mir-17-P4a_5p

mirBase accession

MIMAT0003669

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-20a-5p

Star sequence

Xtr-Mir-17-P4a_3p*

mirBase accession

MIMAT0003670

Sequence

37- ACUGCAUAAUGAGCACUUAAAGU -60

Get sequence

Proposed targets

TargetScanVert: xtr-miR-20a-3p