| MirGeneDB ID | Spt-Mir-17-P4a |
|---|---|
| Family name | MIR-17 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-17-P1a Spt-Mir-17-P1c Spt-Mir-17-P2a Spt-Mir-17-P2c Spt-Mir-17-P4c |
| Orthologues | Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01001394.1: 2548101-2548159 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-17-P4a) |
Mir-17-P1a
QEPC01001394.1: 2547642-2547702 [+]
UCSC
Ensembl
Mir-17-P2a QEPC01001394.1: 2547787-2547851 [+] UCSC Ensembl Mir-19-P1a QEPC01001394.1: 2547937-2547994 [+] UCSC Ensembl Mir-17-P4a QEPC01001394.1: 2548101-2548159 [+] UCSC Ensembl Mir-19-P2a QEPC01001394.1: 2548240-2548300 [+] UCSC Ensembl Mir-92-P1a QEPC01001394.1: 2548356-2548416 [+] UCSC Ensembl |
| Seed | AAAGUGC |
| Precursor (pre-Mir +30nt flank) |
CCAGUGUAGUAAUAACAGCUCCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUAAUCUACUGCAUUAUGAGCACUUAAAGUACUGCUAGCUGUAGAACUACAGCAUCAUUUGet precursor sequence |
| Structure | 10 20 30 40 50 CCAGUGUAGUAAUAACA----| CCU C A- G UGUUU GCU GUAG ACU AAGUGCUUAUAGUGCAG UAG \ CGA CGUC UGA UUCACGAGUAUUACGUC AUC A UUUACUACGACAUCAAGAUGU^ U-- A AA - UAAUG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Spt-Mir-17-P4a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
|
| Star sequence | Spt-Mir-17-P4a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- ACUGCAUUAUGAGCACUUAAAGU -59
Get sequence
|
